Connecting to Tetralith¶

ThinLinc¶

For this course we recommend using ThinLinc, but if you have your own installation of another SSH client that you prefer, you are welcome to use that. We will be using the command line only, so an SSH client like PuTTY would also work.

Download the ThinLinc client from https://www.cendio.com/thinlinc/download and install it.

Logging in¶

Start the client. Enter the name of the server: tetralith.nsc.liu.se and then enter your own username.
Go to “Options” -> “Security”. Check that authentication method is set to password.
Go to “Options” -> “Screen” and uncheck “Full screen mode”.
Enter your NSC password. Click “Connect”.

If you prefer a different SSH client (terminal, etc.), you connect with ssh -Y <user>@tetralith.nsc.liu.se

NOTE 2FA is needed.

Information about connecting: https://www.nsc.liu.se/support/getting-started/
More specific about 2FA: https://www.nsc.liu.se/support/2fa/

Setting up Git¶

Git is already installed on Tetralith, but you need to set your name and email globals unless you have already done this at some earlier time.

Open a terminal. In ThinLinc: Go to the menu at the top. Click “Applications” → “System Tools” → “MATE Terminal”.
Set your global name (change “Your Name”): $ git config --global user.name "Your Name"
Set your global email (change the example): $ git config --global user.email "name@example.com"

You may also want to set your editor. We recommend nano, but other options are vim and emacs (or notepad on Windows).

$ git config --global core.editor nano

Testing your configuration¶

Create an example folder and cd into that, then create a file test.txt:

$ mkdir <mydir> 
$ cd <mydir>
$ touch test.txt

Now initialize a repository and add the new file:

$ git init
$ git add test.txt

Now commit the change. The editor which you configured earlier should open. Add an example commit message:

$ git commit test.txt

Now let us look at the log:

$ git log

When you do git log, you should see something like:

commit ff8b6f699d98c72d5cffc64d65a1c618b976b45a (HEAD -> master)
Author: Birgitte Brydsö <bbrydsoe@cs.umu.se>
Date:   Thu Sep 17 13:53:59 2020 +0200

    Test of git

but with name, email and commit message different.

If that is the case, your Git should be configured correctly.

Download the course materials¶

For the individual hands-on part of the course, we have created some course materials which you will download from either the course website, the course GitHub, or the “important information” page.

Course website: https://www.hpc2n.umu.se/events/courses/2024/fall/git
Course GitHub: https://github.com/hpc2n/course-intro-git
- Click the green button labeled “Code” for links to clone or download the materials.
- Either do 1. CLONE or 2. DOWNLOAD, not both!
  - CLONE: Change to the directory where you wish to have the course material and clone with ‘git clone’ and the url:
    - git clone https://github.com/hpc2n/course-intro-git.git
    - You get the directory: course-intro-git
  - DOWNLOAD Zipfile: Please go to the terminal window where you have downloaded and set up Git. Change the directory to wherever you wish to have the course material.
    - Download the Zipfile and move it there. Can be done directly from the terminal with wget https://github.com/hpc2n/course-intro-git/archive/refs/heads/main.zip)
    - Unpack with unzip main.zip.
    - You will get a directory called course-intro-git-main.

GitHub and SSH keys¶

You need to create an account on GitHub for the course
You also need to create SSH keys on Tetralith and install these on GitHub
We will go through this in a general way which should work regardless of system you are using
- We will go through it before the Teamwork session. The material for creating and setting up SSH keys are here: https://hackmd.io/@git-fall-2024/LC-github