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Introduction

What is a computer?

Overview

Intro to compute clusters

Compute clusters

Files and file systems

Introduction
File systems

Connection to a cluster (Kebnekaise)

Introduction
OpenOnDemand
ThinLinc and SSH

Introduction to Linux

Introduction

Introduction to Git

Introduction

Accessing software on Kebnekaise

Introduction
The module system
Containers

Software from a Git repo

Introduction
Installing

The batch system (Slurm)

Introduction
Important commands
Batch scripts
Monitoring your job
Batch script examples

Accessing databases

Introduction

Extras

Install tree

Using HPC in Bioinformatics

Introduction

Using HPC in Bioinformatics¶

Welcome. This course is given as a cooperation between

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